A1 Refereed journal articles

Apiola, M, Pasanen, T and Lattu, M, Creativity-Supporting Learning Environment. ACM Transactions on Computing Education, vol. 12, no. 3, 2012, Article Number 11.

Apiola, M and Tedre, M, New Perspectives on the Pedagogy of Programming in a Developing Country Context. Computer Science Education, vol. 22, no. 03, 2012, pp. 285.

Björklund, A, Husfeldt, T, Kaski, P and Koivisto, M, The Traveling Salesman Problem in Bounded Degree Graphs. ACM Transactions on Algorithms, vol. 8, no. 2, 2012, Article Number 18.

Caldas, J, Gehlenborg, N, Kettunen, E, Faisal, A, Rönty, M, Nicholson, AG, Knuutila, S, Brazma, A and Kaski, S, Data-driven information retrieval in heterogeneous collections of transcriptomics data links SIM2s to malignant pleural mesothelioma. Bioinformatics, vol. 28, no. 2, 2012, pp. 246-253.

Chanel, G, Kivikangas, JM and Ravaja, N, Physiological compliance for social gaming analysis: Cooperative versus competitive play. Interacting with Computers, vol. 24, no. 4, 2012, pp. 306–316.

Claude, F, Navarro, G, Peltola, H, Salmela, L and Tarhio, J, String matching with alphabet sampling. Journal of Discrete Algorithms, vol. 11, 2012, pp. 37-50.

Congdon, E, Service, S, Wessman, J, Seppanen, JK, Schönauer, S, Miettunen, J, Turunen, H, Koiranen, M, Joukamaa, M, Jarvelin, M-R, Palotie, L, Veijola, J, Mannila, H, Paunio, T and Freimer, NB, Early Environment and Neurobehavioral Development Predict Adult Temperament Clusters. PLoS One, vol. 7, no. 7, Article e38065.

Cui, Y, Hu, W, Wang, H, Chen, D, Tarkoma, S and Ylä-Jääski, A, Probabilistic Multi-path Routing for Multimedia over Wireless Mesh Networks. Ad-Hoc and Sensor Wireless Networks, vol. 14, no. 3-4, 2012, pp. 205-225.

Ebert, C, Abrahamsson, P and Oza, N, Lean Software Development. IEEE Software, vol. 29, no. 5, 2012, pp. 22-25.

Ekman, I, Chanel, G, Kivikangas, JM, Järvelä, S, Salminen, M and Ravaja, N, Social interaction in games: Measuring physiological linkage and social presence. Simulation and Gaming, vol. 43, no. 3, 2012, pp. 321-338.

Elberzhager, F, Münch, J and Vi, TNN, A systematic mapping study on the combination of static and dynamic quality assurance techniques. Information and Software Technology, vol. 54, no. 1, 2012, pp. 1-15.

Elberzhager, F, Rosbach, A, Münch, J and Eschbach, R, Reducing Test Effort: A Systematic Mapping Study on Existing Approaches. Information and Software Technology, vol. 54, no. 10, 2012, pp. 1092–1106.

Eronen, L and Toivonen, H, Biomine: Predicting links between biological entities using network models of heterogeneous databases. BMC Bioinformatics, vol. 13, 2012, Article 119.

Galbrun, E and Miettinen, P, From black and white to full color: extending redescription mining outside the Boolean world. Statistical analysis and data mining, vol. 5, no. 4, 2012, pp. 284-303.

Georgii, E, Salojärvi, JT, Brosche, M, Kangasjärvi, J and Kaski, S, Targeted retrieval of gene expression measurements using regulatory models. Bioinformatics, vol. 28, no. 18, 2012, pp. 2349-2356.

Ghanam, Y, Maurer, F and Abrahamsson, P, Making the leap to a software platform strategy: Issues and challenges. Information and Software Technology, vol. 54, no. 9, 2012, pp. 968-984.

Glaus, P, Honkela, A and Rattray, M, Identifying differentially expressed transcripts from RNA-seq data with biological variation. Bioinformatics, vol. 28, no. 13, 2012, pp. 1721-1728.

Gutmann, MU and Hyvärinen, A, Noise-Contrastive Estimation of Unnormalized Statistical Models, with Applications to Natural Image Statistics. Journal of Machine Learning Research, vol. 13, 2012, pp. 307-361.

Heikinheimo, H, Eronen, JT, Sennikov, A, Preston, CD, Oikarinen, E, Uotila, P, Mannila, H and Fortelius, M, Convergence in the distribution patterns of Europe's plants and mammals is due to environmental forcing. Journal of Biogeography, vol. 39, no. 9, 2012, pp. 1633-1644.

Heinonen, M, Shen, H, Zamboni, N and Rousu, J, Metabolite identification and molecular fingerprint prediction through machine learning. Bioinformatics, vol. 28, no. 18, 2012, pp. 2333-2341.

Hyttinen, A, Eberhardt, F and Hoyer, PO, Learning Linear Cyclic Causal Models with Latent Variables. Journal of Machine Learning Research, vol. 13, 2012, pp. 3387-3439.

Jacucci, G and Telier, A, Drawing things together. Interactions, vol. 19, no. 2, 2012, pp. 34-37.

Järvisalo, M, Biere, A and Heule, M, Simulating Circuit-Level Simplifications on CNF. Journal of Automated Reasoning, vol. 49, no. 4, 2012, pp. 583-619.

Kashif, M, Pietila, S, Artola, K, Jones, RAC, Tugume, AK, Makinen, V and Valkonen, JPT, Detection of Viruses in Sweetpotato from Honduras and Guatemala Augmented by Deep-Sequencing of Small-RNAs. Plant Disease, vol. 96, no. 10, 2012, pp. 1430-1437.

Kaur, P, Ruohomaa, S and Kutvonen, L, Enabling User Involvement in Trust Decision Making for Inter-Enterprise Collaborations. International Journal on Advances in Intelligent Systems, vol. 5, no. 3 and 4, 2012, pp. 533-552.

Khan, SA, Faisal, A, Mpindi, JP, Parkkinen, JA, Kalliokoski, T, Poso, A, Kallioniemi, OP, Wennerberg, K and Kaski, S, Comprehensive data-driven analysis of the impact of chemoinformatic structure on the genome-wide biological response profiles of cancer cells to 1159 drugs. BMC Bioinformatics, vol. 13, 2012, Article 112.

Kim, J, Mitchell, JSB, Polishchuk, V, Yang, S and Zou, J, Routing multi-class traffic flows in the plane. Computational Geometry, vol. 45, no. 3, 2012, pp. 99-114.

Kivioja, T, Vähärautio, A, Karlsson, K, Bonke, M, Enge, M, Linnarsson, S and Taipale, J, Counting absolute numbers of molecules using unique molecular identifiers. Nature methods, vol. 9, no. 1, 2012, pp. 72-74.

Koskinen, M, Viinikanoja, J, Kurimo, M, Klami, A, Kaski, S and Hari, R, Identifying fragments of natural speech from the listener's MEG signals. Human Brain Mapping, 2012, published online.

Kostitsyna, I and Polishchuk, V, Simple Wriggling is Hard Unless You Are a Fat Hippo. Theory of Computing Systems, vol. 50, no. 1, 2012, pp. 93-110.

Kätsyri, J, Ravaja, N and Salminen, M, Aesthetic images modulate emotional responses to reading news messages on a small screen: A psychophysiological investigation. International Journal of Human-Computer Studies, vol. 70, no. 1, 2012, pp. 72-87.

Lamersdorf, A, Münch, J, Fernández-del Viso Torre, A, Rebate Sánchez, C, Heinz, M and Rombach, D, A rule-based model for customized risk identification and evaluation of task assignment alternatives in distributed software development projects. Journal of Software: Evolution and Process, vol. 24, no. 6, 2012, pp. 661-675.

Leen, G, Peltonen, J and Kaski, S, Focused multi-task learning in a Gaussian process framework. Machine Learning, vol. 89, no. 1-2, 2012, pp. 157-182.

Liikkanen, LA, Inducing involuntary musical imagery: An experimental study. Musicae Scientiae, vol. 16, no. 2, 2012, pp. 217-234.

Lindqvist, H, Muinonen, K, Nousiainen, TP, Um, J, McFarquhar, GM, Haapanala, P, Makkonen, R and Hakkarainen, H, Ice-cloud particle habit classification using principal components. Journal of Geophysical Research, vol. 117, 2012, Issue D16206.

Medlar, A, Glowacka, D, Stanescu, H, Bryson, K and Kleta, R, SwiftLink: Parallel MCMC linkage analysis utilising multicore CPU and GPU. Bioinformatics, vol. 29, no. 4, 2012, pp. 413-419.

Meronen, H, Henriksson, SV, Raisanen, P and Laaksonen, A, Climate effects of northern hemisphere volcanic eruptions in an Earth System Model. Atmospheric Research, vol. 114, 2012, pp. 107-118.

Mineraud, J, Donnelly, W, Balasubramaniam, S and Kangasharju, J, fs-PGBR: A Scalable and Delay Sensitive Cloud Routing Protocol. Computer Communications Review, vol. 42, no. 4, 2012, pp. 301-302.

Mäkinen, V, Salmela, L and Ylinen, J, Normalized N50 Assembly Metric using Gap-Restricted Co-Linear Chaining. BMC Bioinformatics, vol. 13, 2012, Article 255.

Nyman, H, Talonen, T, Roine, A, Hupa, M and Corander, J, Statistical Approach to Quality Control of Large Thermodynamic Databases. Metallurgical and Materials Transactions B - Process Metallurgy and Materials Processing Science, vol. 43, no. 5, 2012, pp. 1113-1118.

Pajula, J, Kauppi, J-P and Tohka, J, Inter-Subject Correlation in fMRI: Method Validation against Stimulus-Model Based Analysis. PLoS One, vol. 7, no. 8, 2012, Article e41196.

Puustjärvi, J and Puustjärvi, L, The Role of Learning Object Ontology in Building Personal Curricula for Pharmacists. Public Health Frontier, vol. 1, no. 4, 2012, pp. 98-104.

Quicke, DLJ, Smith, MA, Janzen, DH, Hallwachs, W, Fernandez-Triana, J, Laurenne, NM, Zaldivar-Riveron, A, Shaw, MR, Broad, GR, Klopfstein, S, Shaw, SR, Hrcek, J, Hebert, PDN, Miller, SE, Rodriguez, JJ, Whitfield, JB, Sharkey, MJ, Sharanowski, BJ, Jussila, R, Gauld, ID, Chesters, D and Vogler, AP, Utility of the DNA barcoding gene fragment for parasitic wasp phylogeny (Hymenoptera: Ichneumonoidea): data release and new measure of taxonomic congruence. Molecular Ecology Resources, vol. 12, no. 4, 2012, pp. 676-685.

Ramkumar, P, Parkkonen, L, Hari, R and Hyvärinen, A, Characterization of neuromagnetic brain rhythms over time scales of minutes using spatial independent component analysis. Human Brain Mapping, vol. 33, no. 7, 2012, pp. 1648-1662.

Rao, W, Chen, L, Chen, S and Tarkoma, S, Evaluating continuous top-k queries over document streams. World Wide Web, 2012, published online.

Salmela, L, Average complexity of backward q-gram string matching algorithms. Information Processing Letters, vol. 112, no. 11, 2012, pp. 433-437.

Sambuceti, G, Brignone, M, Marini, C, Massollo, M, Fiz, F, Morbelli, S, Buschiazzo, A, Campi, C, Piva, R, Massone, AM, Piana, M and Frassoni, F, Estimating the whole bone-marrow asset in humans by a computational approach to integrated PET/CT imaging. European Journal of Nuclear Medicine and Molecular Imaging, vol. 39, no. 8, 2012, pp. 1326-1338.

Sarolahti, P, Ott, J and Kangasharju, J, Locations vs. identities in internet content: Applying information-centric principles in today's networks. IEEE Communications Magazine, vol. 50, no. 12, 2012, pp. 54-59.

Solin, O, Ukkonen, E and Haikala, L, Mining the UKIDSS Galactic Plane Survey: star formation and embedded clusters. Astronomy and Astrophysics, vol. 542, no 1, 2012, Article A3.

Tamminen, S, Raita, E, Lehtinen, V, Silfverberg, S and Ravaja, N, Teknologian sosiaalipsykologinen tutkimus. Psykologia, vol. 47, no. 5-6, 2012, pp. 410-422.

Tikka, P, Väljamäe, A, de Borst, AW, Pugliese, R, Ravaja, N, Kaipainen, M and Takala, T, Enactive cinema paves way for understanding complex real-time social interaction in neuroimaging experiments. Frontiers in Human Neuroscience, vol. 6, Article 298, 2012, pp. 1-6.

Titsias, MK, Honkela, A, Lawrence, ND and Rattray, M, Identifying targets of multiple co-regulating transcription factors from expression time-series by Bayesian model comparison. BMC Systems Biology, vol. 6, 2012, Article 53.

Vassos, E, Steinberg, S, Cichon, S, Breen, G, Sigurdsson, E, Andreassen, OA, Djurovic, S, Morken, G, Grigoroiu-Serbanescu, M, Diaconu, CC, Czerski, PM, Hauser, J, Babadjanova, G, Abramova, LI, Muehleisen, TW, Noethen, MM, Rietschel, M, McGuffin, P, St Clair, D, Gustafsson, O, Melle, I, Pietiläinen, O, Ruggeri, M, Tosato, S, Werge, T, Ophoff, RA, Rujescu, D, Borglum, AD, Mors, O, Mortensen, PB, Demontis, D, Hollegaard, MV, van Winkel, R, Kenis, G, De Hert, M, Rethelyi, JM, Bitter, I, Rubino, IA, Golimbet, V, Kiemeney, LA, van den Berg, LH, Franke, B, Jonsson, EG, Farmer, A, Stefansson, H, Stefansson, K, Collier, DA and Consortium, G, Replication Study and Meta-Analysis in European Samples Supports Association of the 3p21.1 Locus with Bipolar Disorder. Biological Psychiatry, vol. 72, no. 8, 2012, pp. 645-650.

Virpioja, S, Paukkeri, M-S, Tripathi, A, Lindh-Knuutila, T and Lagus, K, Evaluating vector space models with canonical correlation analysis. Natural Language Engineering, vol. 18, part 3, 2012, pp. 399-436.

Välimäki, N, Ladra, S and Mäkinen, V, Approximate all-pairs suffix/prefix overlaps. Information and Computation, vol. 213, 2012, pp. 49-58.

Wessman, J, Schönauer, S, Miettunen, J, Turunen, H, Parviainen, P, Seppänen, JK, Congdon, E, Service, S, Koiranen, M, Ekelund, J, Laitinen, J, Taanila, A, Tammelin, T, Hintsanen, M, Pulkki-Raback, L, Keltikangas-Jarvinen, L, Viikari, J, Raitakari, OT, Joukamaa, M, Jarvelin, M-R, Freimer, N, Palotie, L, Veijola, J, Mannila, H and Paunio, T, Temperament Clusters in a Normal Population: Implications for Health and Disease. PLoS One, vol. 7, no. 7, 2012, Article e33088.

Willems, RJL, Top, J, van Schaik, W, Leavis, H, Bonten, M, Siren, J, Hanage, WP and Corander, J, Restricted Gene Flow among Hospital Subpopulations of Enterococcus faecium. mBio, vol. 3, no. 4, 2012, Article e00151-12.

Xiao, Y, Li, W, Siekkinen, M, Savolainen, P, Ylä-Jääski, A and Hui, P, Power Management for Wireless Data Transmission Using Complex Event Processing. IEEE Transactions on Computers, vol. 61, no. 12, 2012, pp. 1765-1777.

Yao, Y, Ruohomaa, S and Xu, F, Addressing common vulnerabilities of reputation systems for electronic commerce. Journal of Theoretical and Applied Electronic Commerce Research, vol. 7, 2012, pp. 1-15.

A2 Reviews in scientific journals

Martínez-Ruiz, T, Münch, J, García, F and Piattini, M, Requirements and constructors for tailoring software processes: a systematic literature review. Software Quality Journal, vol. 20, no. 1, 2012, pp. 229-260.

Tarkoma, S, Rothenberg, CE and Lagerspetz, E, Theory and Practice of Bloom Filters for Distributed Systems. Communications Surveys and Tutorials, vol. 14, no. 1, 2012, pp. 131-155.

A3 Contributions to book/other compilations (refereed)

Blanton, E, Allman, M, Wang, L, Järvinen, I, Kojo, MPI and Nishida, Y, A Conservative Loss Recovery Algorithm Based on Selective Acknowledgment (SACK) for TCP.  Request for comments, Internet RFCs, no. RFC 6675, Internet Engineering Task Force, 2012.

Hoggan, E and Brewster, S, NonSpeech Auditory and Crossmodal Output. JA Jacko (ed.), The Human-Computer Interaction Handbook: Fundamentals, Evolving Technologies, and Emerging Applications, 3rd edition, CRC Press, 2012, pp. 211-236.

A4 Articles in conference publication (refereed)

Ahonen, T, Compression-based Similarity Measuring in Music Information Retrieval. Proceedings of the Federated Computer Science Event 2012, Helsinki, Finland, May 28-29, 2012, University of Helsinki, Department of Computer Science, Series of Publications B, Report B-2012-1, Helsinki, 2012, pp. 68-69.

Ahonen, T, Compression-based Clustering of Chromagram Data: New Method and Representations. Proceedings of the 9th International Symposium on Computer Music Modeling and Retrieval, 2012, pp. 474-481.

Apiola, M-V, Lähde, K, Tedre, M and Pakarinen, S, From Research and Design Milieu to a Living Lab: Ukombozi School in Tanzania. Proceedings of the IST-Africa 2012 Conference, 2012, pp. 155-.

Apiola, M-V, Moisseinen, N and Tedre, M, Results From an Action Research Approach for Designing CS1 Learning Environments in Tanzania. Proceedings of the 42th ASEE/IEEE Frontiers in Education Conference (FIE 2012), 2012, pp. 830-835.

Apiola, M-V, Tedre, M, Lattu, MP and Pasanen, T, Towards a Framework for Designing and Analyzing CS Learning Environments. Proceedings of the 42th ASEE/IEEE Frontiers in Education Conference (FIE 2012), 2012, pp. 600-605.

Arkin, E, Efrat, A, Mitchell, J, Hart, G, Kostitsyna, I, Kroeller, A and Polishchuk, V, Scandinavian Thins on Top of Cake: on the Smallest One-Size-Fits-All Box. Proceedings of the International Conference on Fun with Algorithms 2012, Venice, Italy, 2012, pp. 16-27.

Bhattacharya, S, Floréen, P, Forsblom, A, Hemminki, S, Myllymäki, P, Nurmi, P, Pulkkinen, T and Salovaara, A, Ma$$iv€ - An Intelligent Mobile Grocery Assistant. Proceedings of the Eighth International Conference on Intelligent Environments (IE 2012), 2012, pp. 165-172.

Björklund, A, Husfeldt, T, Kaski, P, Koivisto, M, Nederlof, J and Parviainen, P, Fast zeta transforms for lattices with few irreducibles. Proceedings of the Twenty-Third Annual ACM-SIAM Symposium on Discrete Algorithms (SODA 12), 2012, pp. 1436-1444.

Daniel, L and Kojo, MPI, Enhancing TCP with Cross-layer Notifications and Capacity Estimation in Heterogeneous Access Networks. Proceedings of the 37th IEEE Conference on Local Computer Networks (LCN 2012), 2012, pp. 396-404.

Ding, AY, Hui, P, Kojo, MPI and Tarkoma, S, Enabling Energy-Aware Mobile Data Offloading for Smartphones Through Vertical Collaboration. Proceedings of the ACM International Conference on emerging Networking EXperiments and Technologies (ACM CoNEXT 2012) PhD Student Workshop, 2012, pp. 27-28.

Ding, Y, Savolainen, T, Korhonen, J and Kojo, MPI, Speeding up IPv6 Transition: Discovering NAT64 and Learning Prefix for IPv6 Address Synthesis. Proceedings of the IEEE International Conference on Communications (IEEE ICC 2012), 2012, pp. 6862-6868.

Dvorak, W, Järvisalo, M, Wallner, J and Woltran, S, Complexity-Sensitive Decision Procedures for Abstract Argumentation. Proceedings of the 13th International Conference on Principles of Knowledge Representation and Reasoning (KR 2012), 2012, pp. 54-64.

Dvorak, W, Järvisalo, M, Wallner, J and Woltran, S, CEGARTIX: A SAT-Based Argumentation System. Proceedings of the 3rd Workshop on Pragmatics of SAT, 2012.

Elberzhager, F, Kremer, S, Münch, J and Assmann, D, Guiding Testing Activities by Predicting Defect-prone Parts using Product and Inspection Metrics. Proceedings of  Euromicro Conference on Software Engineering and Advanced Applications, Cesme, Izmir, Turkey, September 5-8, 2012, pp. 406-413.

Elberzhager, F, Rosbach, A, Münch, J and Eschbach, R, Inspection and Test Process Integration based on Explicit Test Prioritization Strategies. Proceedings of the 4th International Conference on Software Quality: Process Automation in Software Development (SWQD 2012), Vienna, Austria, January 17-19, 2012, Lecture Notes in Business Information Processing, vol. 94, no. 7, 2012, pp. 181-192.

Entner, D and Hoyer, P, Estimating a Causal Order among Groups of Variables in Linear Models. Proceedings of the 22nd International Conference on Artificial Neural Networks, Artificial Neural Networks and Machine Learning (ICANN 2012), Lausanne, Switzerland, September 11-14, 2012, Lecture Notes in Computer Science, vol. 7553, 2012, pp. 83-90.

Entner, D, Hoyer, P and Spirtes, P, Statistical test for consistent estimation of causal effects in linear non-Gaussian models. Proceedings of the 15th International Conference on Artificial Intelligence and Statistics (AISTATS-2012), Journal of Machine Learning Research – Proceedings Track, vol. 22, 2012, pp. 364-372.

Fagerholm, F and Münch, J, Developer Experience: Concept and Definition. Proceedings of the 2012 International Conference on Software and System Process (ICSSP 2012), 2012, pp. 73-77.

Faisal, A, Gillberg, J, Peltonen, J, Leen, G and Kaski, S, Sparse Nonparametric Topic Model for Transfer Learning. Proceedings of the 20th European Symposium on Artificial Neural Networks, 2012, pp. 269-274.

Fischer, J, Gagie, T, Kopelowitz, T, Lewenstein, M, Mäkinen, V, Salmela, L and Välimäki, N, Forbidden Patterns. Proceedings of the 10th Latin American Symposium Theoretical Informatics: (LATIN 2012), Arequipa, Peru, April 16-20, 2012, Lecture Notes in Computer Science, vol. 7256, 2012, pp. 327-337.

Forsblom, A, Nurmi, P, Åman, P and Liikkanen, L, Out of the bubble: serendipitous event recommendations at an urban music festival. Proceedings of the 2012 ACM International Conference on Intelligent User Interfaces (IUI’12), 2012, pp. 253-256.

Frosterus, M, Hyvönen, E and Wahlroos, MP, Extending Ontologies with Free Keywords in a Collaborative Annotation Environment. Proceedings of the ISWC 2011 Workshop Ontologies Come of Age in the Semantic Web (OCAS), CEUR Workshop Proceedings, vol. 809, 2012, pp. 13-18.

Gagie, T, Gawrychowski, P, Kärkkäinen, J, Nekrich, Y and Puglisi, SJ, Faster Grammar-based Self-index. Proceedings of the 6th International Conference on Language and Automata Theory and Applications (LATA 2012), A Coruña, Spain, March 5-9, 2012, Lecture Notes in Computer Science, vol. 7183, 2012, pp. 240-251.

Gagie, T, Karhu, K, Kärkkäinen, J, Mäkinen, V, Salmela, L and Tarhio, J, Indexed Multi-Pattern Matching. Proceedings of the 10th Latin American Symposium Theoretical Informatics: (LATIN 2012), Arequipa, Peru, April 16-20, 2012, Lecture Notes in Computer Science, vol. 7256, 2012, pp. 399-407.

Galbrun, E and Kimmig, A, Towards Finding Relational Redescriptions. Proceedings of the 15th International Conference on Discovery Science (DS 2012), Lyon, France, October 29-31, 2012, Lecture Notes in Computer Science, vol. 7569, 2012, pp. 52-66.

Galbrun, E and Miettinen, P, A Case of Visual and Interactive Data Analysis: Geospatial Redescription Mining. Proceedings of the ECML PKDD 2012 Workshop on Instant Interactive Data Mining, Bristol, United Kingdom, September 24, 2012.

Galbrun, E and Miettinen, PA, Siren: An Interactive Tool for Mining and Visualizing Geospatial Redescriptions [Demo]. Proceedings of the 18th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD ‘12), 2012, pp. 1544-1547.

Gamberini, L, Spagnolli, A, Corradi, N, Jacucci, G, Tusa, G, Mikkola, T, Zamboni, L and Hoggan, E, Tailoring Feedback to Users’ Actions in a Persuasive Game for Household Electricity Conservation.  Proceedings of the 7th International Conference on Persuasive Technology, Design for Health and Safety (PERSUASIVE 2012), Linköping, Sweden, June 6-8, 2012, Lecture Notes in Computer Science, vol. 7284, 2012, pp. 100-111.

Gaspers, S, Koivisto, M, Liedloff, M, Ordyniak, S and Szeider, S, On Finding Optimal Polytrees. Proceedings of the Twenty-Sixth AAAI Conference on Artificial Intelligence (AAAI 2012), 2012, pp. 750-756.

Giurcaneanu, CD, Luosto, P and Kontkanen, P, On the performance of histogram-based entropy estimators. Proceedings of the IEEE International Workshop on Machine Learning for Signal Processing (MLSP 2012), 2012, pp. 1-6.

Gog, S, Karhu, K, Kärkkäinen, J, Mäkinen, V and Välimäki, N, Multi-Pattern Matching with Bidirectional Indexes. Proceedings of the 18th Annual International Conference on Computing and Combinatorics (COCOON 2012), Sydney, Australia, August 20-22, 2012, Lecture Notes in Computer Science, vol. 7434, 2012, pp. 384-395.

Gross, O, Toivonen, H, Toivanen, J and Valitutti, A, Lexical Creativity from Word Associations. Proceedings of the 7th IEEE International Conference on Knowledge, Information and Creativity Support Systems (KICSS 2012), 2012, pp. 35-42.

Gutmann, MU and Hyvärinen, A, Learning a selectivity-invariance-selectivity feature extraction architecture for images. Proceedings of International Conference on Pattern Recognition (ICPR 2012), Tsukuba, Japan, 2012, pp. 918-921.

Göös, M, Hirvonen, J and Suomela, J, Lower bounds for local approximation. Proceedings of the 2012 ACM Symposium on Principles of Distributed Computing (PODC’12), Madeira, Portugal, July 16–18, 2012, pp. 175–184.

Göös, M and Suomela, J, No sublogarithmic-time approximation scheme for bipartite vertex cover. Proceedings of the 26th International Symposium on Distributed Computing (DISC 2012), Salvador, Brazil, October 16–18, 2012, Lecture Notes in Computer Science, vol. 7611, 2012, pp. 181-194.

Hasemann, H, Hirvonen, JP, Rybicki, J and Suomela, J, Deterministic local algorithms, unique identifiers, and fractional graph colouring. Revised selected papers of the 19th International Colloquium on Structural Information and Communication Complexity (SIROCCO 2012), Reykjavik, Iceland, June 30-July 2, 2012, Lecture Notes in Computer Science, vol. 7355, 2012, pp. 48–60.

Hautala, T, Romu, T, Rämö, J and Vikberg, TJ, Extreme Apprenticeship Method in Teaching University-Level Mathematics. Proceedings of the 12th International Congress on Mathematical Education, 2012.

Heinonen, M, Välimäki, N, Mäkinen, V and Rousu, J, Efficient Path Kernels for Reaction Function Prediction. Proceedings of the 3rd International Conference on Bioinformatics Models, Methods and Algorithms, Algarve, Portugal, Feb 1-4, 2012, pp. 202-207.

Hella, L, Järvisalo, M, Kuusisto, A, Laurinharju, J, Lempiäinen, T, Luosto, K, Suomela, J and Virtema, J, Weak Models of Distributed Computing, with Connections to Modal Logic. Proceedings of the 2012 ACM Symposium on Principles of Distributed Computing (PODC’12), Madeira, Portugal, July 16–18, 2012, pp. 185–194.

Hirayama, J and Hyvärinen, A, Structural equations and divisive normalization for energy-dependent component analysis.  Advances in the Neural Information Processing Systems (NIPS 2011), vol. 24, Granada, Spain, 2012, pp. 1872-1880.

Hirvonen, J and Suomela, J, Distributed maximal matching: greedy is optimal. Proceedings of the 2012 ACM Symposium on Principles of Distributed Computing (PODC’12), Madeira, Portugal, July 16–18, 2012, pp. 165–174.

Hoggan, E, Stewart, C, Haverinen, L, Jacucci, G and Lantz, V, Pressages: Augmenting Phone Calls with Non-Verbal Messages. Proceedings of the 25th Annual ACM Symposium on User Interface Software and Technology (UIST’12), 2012, pp. 555-562.

Hyttinen, A, Eberhardt, F and Hoyer, P, Causal Discovery of Linear Cyclic Models from Multiple Experimental Data Sets with Overlapping Variables. Proceedings of the 28th Conference on Uncertainty in Artificial Intelligence (UAI’12), 2012, pp. 387-396.

Hyytiä, E, Lassila, P, Ott, J and Kangasharju, J, Floating information with stationary nodes. Proceedings of the10th International Symposium on Modeling and Optimization in Mobile, Ad Hoc and Wireless Networks (WiOpt 2012), 2012, pp. 361-366.

Järvelä, S, Ekman, I, Kivikangas, JM and Ravaja, N, Digital games as experiment stimulus.  Proceedings of the DiGRA Nordic 2012 Conference: Local and Global - Games in Culture and Society, 2012.

Järvinen, I, Ding, Y, Nyrhinen, AM and Kojo, MPI, Harsh RED: Improving RED for Limited Aggregate Traffic. Proceedings of the26th IEEE International Conference on Advanced Information Networking and Applications (AINA 2012), 2012, pp. 832-840.

Järvisalo, M, Heule, M and Biere, A, Inprocessing Rules. Proceedings of the 6th International Joint Conference on Automated Reasoning (IJCAR 2012), Manchester, UK, June 26-29, 2012, Lecture Notes in Computer Science, vol. 7364, 2012, pp. 355-370.

Järvisalo, M, Kaski, P, Koivisto, M and Korhonen, JH, Finding Efficient Circuits for Ensemble Computation. Proceedings of the 15th International Conference on Theory and Applications of Satisfiability Testing (SAT 2012), Trento, Italy, June 17-20, 2012, Lecture Notes in Computer Science, vol. 7317, 2012, pp. 369-382.

Järvisalo, M, Matsliah, A, Nordström, J and Zivny, S, Relating Proof Complexity Measures and Practical Hardness of SAT. Proceedings  of the 18th International Conference on Principles and Practice of Constraint Programming (CP 2012), Québec City, QC, Canada, October 8-12, 2012, Lecture Notes in Computer Science, vol. 7514, 2012, pp. 316-33.

Kandemir, M and Kaski, S, Learning Relevance from Natural Eye Movements in Pervasive Interfaces. Proceedings of the 14th ACM International Conference on Multimodal interaction (ICMI’12), 2012, pp. 82-85.

Kandemir, M, Klami, A, Vetek, A and Kaski, S, Unsupervised Inference of Auditory Attention from Biosensors. Proceedings of the European Conference on Machine Learning and Knowledge Discovery in Databases (ECML PKDD 2012), Bristol, UK, September 24-28, 2012, Part II, Lecture Notes in Computer Science, vol. 7524, 2012, pp. 403-418.

Karkulahti, O and Kangasharju, J, Surveying Wikipedia activity: Collaboration, commercialism, and culture. Proceedings of the 2012 International Conference on Information Networking (ICOIN 2012), 2012, pp. 384 - 389.

Kaski, P, Koivisto, M and Korhonen, JH, Fast Monotone Summation over Disjoint Sets. Proceedings of the 7th International Symposium on Parameterized and Exact Computation (IPEC 2012), Ljubljana, Slovenia, September 12-14, 2012, Lecture Notes in Computer Science, vol. 7535, 2012, pp. 159-170.

Kaski, P, Koivisto, M and Nederlof, J, Homomorphic Hashing for Sparse Coefficient Extraction. Proceedings of the 7th International Symposium on Parameterized and Exact Computation (IPEC 2012), Ljubljana, Slovenia, September 12-14, 2012, Lecture Notes in Computer Science, vol. 7535, 2012, pp. 147-158.

Kaur, P, Ruohomaa, S and Kutvonen, L, User interface for trust decision making in inter-enterprise collaborations. Proceedings of the Fifth International Conference on Advances in Computer-Human Interactions (ACHI 2012), 2012, pp. 122-127.

Kettunen, P and Moilanen, S, Sensing High-Performing Software Teams: Proposal of an Instrument for Self-monitoring. Proceedings of the 13th International Conference  on Agile Processes in Software Engineering and Extreme Programming (XP 2012), Malmö, Sweden, May 21-25, 2012, Lecture Notes in Business Information Processing, vol. 111, 2012, pp. 77-92.

Komu, M, Sethi, M, Mallavarapu, R, Oirola, H, Khan, R and Tarkoma, S, Secure Networking for Virtual Machines in the Cloud. Proceedings of the 2012 IEEE International Conference on Cluster Computing Workshops (CLUSTER workshops 2012), Beijing, China, September 24-28, 2012, pp. 88-96.

Komu, M, Varjonen, S, Tarkoma, S and Gurtov, A, Sockets and Beyond: Assessing the Source Code of Network Applications. Proceedings of the Federated Computer Science Event 2012, University of Helsinki, Department of Computer Science, Series of Publications B, B-2012-1, Helsinki, 2012, pp. 60-61.

Komu, M, Varjonen, S, Tarkoma, S and Gurtov, A, Sockets and Beyond: Assessing the Source Code of Network Applications. Proceedings of the Linux Symposium (OLS 2012), 2012, pp. 7-24.

Kutvonen, L and Norta, A, A Cloud HUB for Brokering Business Processes as a Service: A "Rendezvous" Platform that Supports Semi-automated Background Checked Partner Discovery for Cross-Enterprise Collaboration. Proceedings of the Annual SRII Global Conference (SRII 2012), 2012, pp. 293-302.

Kutvonen, L, Multi-tier agent architecture for open service ecosystems. Proceedings of the First International Conference on Agreement Technologies (AT 2012), Dubrovnik, Croatia, October 15-16, 2012, CEUR Workshop Proceedings, vol. 918, 2012, pp. 302-316.

Kärkkäinen, J, Kempa, D and Puglisi, SJ, Slashing the Time for BWT Inversion. Proceedings of the Data Compression Conference (DCC 2012), 2012, pp. 99-108.

Kärkkäinen, J, Mikkola, P and Kempa, D, Grammar Precompression Speeds Up Burrows-Wheeler Compression. Proceedings  of the 19th International Symposium on String Processing and Information Retrieval (SPIRE 2012), Cartagena de Indias, Colombia, October 21-25, 2012, Lecture Notes in Computer Science, vol. 7608, 2012, pp. 330-335.

Langohr, LA and Toivonen, H, A Model for Mining Relevant and Non-redundant Information. Proceedings of the 27th Annual ACM Symposium on Applied Computing (SAC’12), 2012, pp. 132-137.

Langohr, LA and Toivonen, H, Retrieval of Relevant and Non-redundant Nodes. Proceedings of the First SDM Workshop on Dynamic Network Analysis, in conjunction with the Twelfth SIAM International Conference on Data Mining, 2012, pp. 32-40.

Lindquist, T, Hyvönen, E, Törnroos, J and Mäkelä, E, Leveraging linked data to enhance subject access: A case study of the University of Colorado Boulder s World War I collection online. Proceedings of the78th IFLA General Conference and Assembly, Helsinki, Finland, August 11-17, 2012. Congress CD-ROM.

Liu, Z, Malone, B and Yuan, C, Empirical evaluation of scoring functions for Bayesian network model selection. Proceedings of the Ninth Annual MCBIOS Conference: Dealing with the Omics Data Deluge, 2012.

Luosto, P, Giurcaneanu, CD and Kontkanen, P, Construction of irregular histograms by penalized maximum likelihood: a comparative study. Proceedings of the IEEE Information Theory Workshop (ITW’12), 2012, pp. 297-301.

Luukkainen, M, Vihavainen, A and Vikberg, TJ, Three years of design-based research to reform a software engineering curriculum. Proceedings of the 13th Annual Conference on Information Technology Education, 2012, pp. 209-214.

Luukkainen, M, Vihavainen, A and Vikberg, T, A Software Craftsman's Approach to Data Structures. Proceedings of the 43rd ACM Technical Symposium on Computer Science Education, 2012, pp. 439-444.

Malone, BM and Yuan, C, A Bounded Error, Anytime, Parallel Algorithm for Exact Bayesian Network Structure Learning. Proceedings of the Sixth European Workshop on Probabilistic Graphical Models (PGM'12), 2012, pp. 235-242.

Mineraud, J, Balasubramaniam, S, Kangasharju, J and Donnelly, W, Fs-PGBR: a scalable and delay sensitive cloud routing protocol. Proceedings of the ACM SIGCOMM 2012 Conference on Applications, Technologies, Architectures, and Protocols for Computer Communication (SIGCOMM 12), 2012, pp. 301-302.

Mäkelä, E, Hypén, K and Hyvönen, E, Improving Fiction Literature Access by Linked Open Data Based Collaborative Knowledge Storage - the BookSampo Project. Proceedings of the78th IFLA General Conference and Assembly, Helsinki, Finland, August 11-17, 2012. Congress CD-ROM.

Niinimäki, T and Parviainen, P, Local Structure Discovery in Bayesian Networks. Proceedings of the Twenty-Eighth Conference on Uncertainty in Artificial Intelligence (UAI-12), 2012, pp. 634-643.

Oliner, AJ, Iyer, A, Lagerspetz, E, Tarkoma, S and Stoica, I, Collaborative energy debugging for mobile devices. Proceedings of the Eighth USENIX conference on Hot Topics in System Dependability (HotDep'12), 2012, p. 6.

Ott, J and Kangasharju, J, Opportunistic content sharing applications. Proceedings of the 1st ACM workshop on Emerging Name-Oriented Mobile Networking Design - Architecture, Algorithms, and Applications (NoM’12), 2012, pp. 19-24.

Oulasvirta, A, Pihlajamaa, A, Perkiö, JP, Ray, D, Vähäkangas, T, Hasu, T, Vainio, N and Myllymäki, P, Long-term effects of ubiquitous surveillance in the home. Proceedings of the the 14th International ACM Conference on Ubiquitous Computing (UbiComp’12), 2012, pp. 41-50.

Oza, N and Korkala, M, Lessons Learned In Implementing Agile Software Development Metrics. UK Academy for Information Systems Conference Proceedings 2012, 2012, Article 38.

Paalasmaa, J, Murphy, DJ and Holmqvist, O, Analysis of Noisy Biosignals for Musical Performance. Proceedings of the 11th International Symposium on Advances in Intelligent Data Analysis XI (IDA 2012), Helsinki, Finland, October 25-27, 2012, Lecture Notes in Computer Science, vol. 7619, 2012, pp. 241–252.

Paalasmaa, J, Waris, M, Toivonen, H, Leppäkorpi, L and Partinen, M, Unobtrusive Online Monitoring of Sleep at Home. Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC'12), 2012, pp. 3784-3788.

Pervilä, M, Kangasharju, J and Remes, L, Harvesting Heat in an Urban Greenhouse. Proceedings of The First Workshop on Urban Networking (UrbaNe'12), co-located with CoNEXT'12, 2012, pp. 7-12.

Pervilä, M, Rantanen, M and Kangasharju, J, Implementation and Evaluation of a Wired Data Center Sensor Network. Revised Selected Papers of the First International Workshop on Energy Efficient Data Centers (E2DC 2012), Madrid, Spain, May 8, 2012, Lecture Notes in Computer Science, vol. 7396, 2012, pp. 105-116.

Phaphoom, N, Oza, N, Wang, X and Abrahamsson, P, Does cloud computing deliver the promised benefits for IT industry? Proceedings of the Joint 10th Working IEEE/IFIP Conference on Software Architecture & 6th European Conference on Software Architecture (WICSA/ECSA 2012), 2012, pp. 45-52.

Polishchuk, V and Andersson, T, Socially optimal allocation of ATM resources via truthful market-based mechanisms. Proceedings of the 2nd SESAR Innovation Days (SID 2012) , 2012.

Pulkkinen, T and Nurmi, PT, AWESOM: Automatic Discrete Partitioning of Indoor Spaces for WiFi Fingerprinting. Proceedings of the 10th International Conference on Pervasive Computing (Pervasive 2012), Newcastle, UK, June 18-22, 2012, Lecture Notes in Computer Science, vol. 7319, 2012, pp. 271-288.

Rao, W, Chen, L, Hui, P and Tarkoma, S, Move: A Large Scale Keyword-based Content Filtering and Dissemination System. Proceedings of the 32nd IEEE International Conference on Distributed Computing Systems (ICDCS 2012), 2012, pp. 445-454.

Rao, W, Zhao, K, Lagerspetz, E, Hui, P and Tarkoma, S, Energy-aware keyword search on mobile phones. Proceedings of the First Edition of the MCC workshop on Mobile Cloud Computing  (MCC 12), 2012, pp. 59-64.

Rao, W, Zhao, K, Zhans, Y, Hui, P and Tarkoma, S, Maximizing timely content advertising in DTNs. Proceedings of the 9th Annual IEEE Communications Society Conference on Sensor, Mesh and Ad Hoc Communications and Networks (SECON 2012), 2012, pp. 254-262.

Ruohomaa, S, Kaur, P and Kutvonen, L, From subjective reputation to verifiable experiences - augmenting peer-control mechanisms for open service ecosystems. Proceedings of the 6th IFIP WG 11.11 International Conference on Trust Management VI (IFIPTM 2012), Surat, India, May 21-25, 2012, IFIP Advances in Information and Communication Technology, vol. 374, 2012, pp. 142-157.

Ruokolainen, T and Kutvonen, L, An Architecture Framework for Facilitating Sustainability in Open Service Ecosystems. Proceedings of the16th International Enterprise Distributed Object Computing Conference Workshops (EDOCW 2012), 2012, pp. 84-93.

Sankararaman, S, Abu-affash, K, Efrat, A, Eriksson-Bique, SD, Polishchuk, V, Ramasubramanian, S and Segal, M, Optimization Schemes for Protective Jamming. Proceedings of the Thirteenth ACM International Symposium on Mobile Ad Hoc Networking and Computing (MobiHoc 2012), Hilton Head Island, NC, United States, 2012, pp. 65-74.

Sasaki, H, Gutmann, MU, Shouno, H and Hyvärinen, A, Topographic Analysis of Correlated Components. Proceedings of the Asian Conference on Machine Learning, Journal of Machine Learning Research – Proceedings Track, vol. 25, 2012, pp. 365-378.

Skarkala, ME, Maragoudakis, M, Gritzalis, S, Mitrou, L, Toivonen, H and Moen, P, Privacy Preservation by k-Anonymization of Weighted Social Networks. Proceedings of the IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM 2012), Istanbul, Turkey, August 26-29, 2012, pp. 423-428.

Stewart, C, Hoggan, E, Haverinen, L, Salamin, H and Jacucci, G, An Exploration of Inadvertent Variations in Mobile Pressure Input. Proceedings of the 14th International Conference on Human-computer Interaction with Mobile Devices and Services (MobileHCI'12), 2012, pp. 35-38.

Suominen, O, Johansson, A, Ylikotila, H, Tuominen, J and Hyvönen, E, Vocabulary Services Based on SPARQL Endpoints: ONKI Light on SPARQL. Poster proceedings of the 18th International Conference on Knowledge Engineering and Knowledge Management (EKAW 2012), Galway, Ireland, 2012.

Suominen, O and Hyvönen, E, Improving the Quality of SKOS Vocabularies with Skosify. Proceedings of the 18th International Conference on Knowledge Engineering and Knowledge Management (EKAW 2012), Galway City, Ireland, October 8-12, 2012, Lecture Notes in Computer Science, vol. 7603, pp. 383-397.

Tashiro, T, Shimizu, S, Hyvärinen, A and Washio, T, Estimation of causal orders in a linear non-gaussian acyclic model: a method robust against latent confounders. Proceedings  of 22nd International Conference on Artificial Neural Networks: the Artificial Neural Networks and Machine Learning (ICANN 2012), Lausanne, Switzerland, September 11-14, 2012, Lecture Notes in Computer Science, vol. 7552, 2012, pp. 491-498.

Tedre, M, Pasanen, T, McIntyre, D, Oroma, J, Ngumbuke, F and Sutinen, E, Four Years of IT Program Development in Tanzania. Proceedings of the IST-Africa 2012 Conference, 2012, pp. 9-11.

Timonen, MJ, Categorization of Very Short Documents. Proceedings of the 4th International Conference on Knowledge Discovery and Information Retrieval (KDIR 2012), 2012, pp. 5-16.

Toivanen, J, Toivonen, H, Valitutti, A and Gross, O, Corpus-Based Generation of Content and Form in Poetry. Proceedings of the Third International Conference on Computational Creativity, 2012, pp. 175-179.

Tulilaulu, A, Paalasmaa, J, Waris, M and Toivonen, H, Sleep Musicalization: Automatic Music Composition from Sleep Measurements. Proceedings of the 11th International Symposium on Advances in Intelligent Data Analysis XI (IDA 2012), Helsinki, Finland, October 25-27, 2012, Lecture Notes in Computer Science, vol. 7619, 2012, pp. 392-403.

Tuominen, J, Laurenne, N and Hyvönen, E, An Ontology Model and Service for Managing Scientific and Common Names of Plants. Poster and Demo Proceedings of the 2nd Joint International Semantic Technology Conference (JIST2012), Nara, Japan, 2012.

Vihavainen, A, Luukkainen, M and Kurhila, J, Multi-faceted support for MOOC in programming. Proceedings of the 13th Annual Conference on Information Technology Education, 2012, pp. 171-176.

Viljanen, KEA, Tuominen, J, Mäkelä, E, Osma, S and Hyvönen, E, Normalized Access to Ontology Repositories. Proceedings of the Sixth International Conference on Semantic Computing (IEEE ICSC 2012), Palermo, Italy, 2012, pp. 109-116.

Virtanen, S, Klami, A, Khan, SA and Kaski, S, Bayesian Group Factor Analysis. Proceedings of the Fifteenth International Conference on Artificial Intelligence and Statistics, 2012, pp. 1269-1277.

Vähäkangas, T and Pyykkö, J, VisciPad: Peeking Into a Collaborative Creative Writing Project in Elementary School. Proceedings of the 10th International Conference on Creating, Connecting and Collaborating through Computing (C5), 2012, pp. 37-44.

Välimäki, N, Least Random Suffix/Prefix Matches in Output-Sensitive Time. Proceedings of the 23rd Annual Symposium  on Combinatorial Pattern Matching (CPM 2012), Helsinki, Finland, July 3-5, 2012, Lecture Notes in Computer Science, vol. 7354, 2012, pp. 269-279.

Välimäki, N and Puglisi, SJ, Distributed String Mining for High-Throughput Sequencing Data. Proceedings of the 12th International Workshop on Algorithms in Bioinformatics (WABI 2012), Ljubljana, Slovenia, September 10-12, 2012, Lecture Notes in Computer Science, vol. 7534, 2012, pp. 441-452.

Wang, L and Kangasharju, J, Real-World Sybil Attacks in BitTorrent Mainline DHT. Proceedings of the the IEEE GLOBECOM 2012 Symposium on Communication and Information System Security (CISS’12), 2012, pp. 844-850.

Wettig, J, Nouri, J, Reshetnikov, K and Yangarber, R, Information-theoretic Methods for Analysis and Inference in Etymology. Proceedings of the Fifth Workshop on Information-theoretic Methods in Science and Engineering, 2012, pp. 53-56.

Wettig, H, Reshetnikov, K and Yangarber, R, Using Context and Phonetic Features in Models of Etymological Sound Change. Proceedings of the EACL 2012 Joint Workshop of LINGVIS and UNCLH, 2012, pp. 108-116.

Wijekoon, D, Cecchinato, M, Hoggan, E and Linjama, J, Electrostatic Modulated Friction as Tactile Feedback: Intensity Perception. Proceedings of the 2012 International Conference on Haptics: Perception, Devices, Mobility, and Communication (Haptics’12), Part I, 2012, Lecture Notes in Computer Science, vol. 7282, 2012, pp. 613-624.

Wong, W, Wang, L and Kangasharju, J, Neighborhood Search and Admission Control in Cooperative Caching Networks. Proceedings of the IEEE GLOBECOM 2012 Symposium on Next Generation Networking and Internet Symposium (NGNI’12), 2012, pp. 2876-2882.

Yuan, C and Malone, BM, An Improved Admissible Heuristic for Finding Optimal Bayesian Networks. Proceedings of the 28th Conference of Uncertainty in Artificial Intelligence (UAI 2012), 2012, pp. 2186-2191.

B1 Unrefereed journal articles

Corander, J, Aittokallio, T, Ripatti, S and Kaski, S, The rocky road to personalized medicine: computational and statistical challenges. Personalized Medicine, vol. 9, no. 2, 2012, pp. 109-114.

Järvisalo, M, Le Berre, D, Roussel, O and Simon, L, The International SAT Solver Competitions. AI Magazine, vol. 33, no. 1, 2012, pp. 89-92.

Roos, T, Myllymäki, P and Jaakkola, T (eds), Editorial: Special issue on the Fifth European Workshop on Probabilistic Graphical Models (PGM-2010). International Journal of Approximate Reasoning, vol. 59, no. 9, 2012, pp. 1303–1304.

Tuominen, J, Viljanen, KEA and Hyvönen, E, Ontologiapalvelut semanttisessa webissä. Tietojenkäsittelytiede, no. 34, 2012, pp. 17–36.

B2 Contributions to books/other compilations (non-refereed)

Eronen, L, Hintsanen, P and Toivonen, H, Biomine: A network-structured resource of biological entities for link prediction. MR Berthold (ed.), Bisociative Knowledge Discovery: An Introduction to Concept, Algorithms, Tools, and Applications, Lecture Notes in Artificial Intelligence (LNAI), vol. 7250, 2012, Springer-Verlag, pp. 364–378.

Hynönen, T, Mahler, SJ and Toivonen, H, Discovery of Novel Term Associations in a Document Collection. MR Berthold (ed.), Bisociative Knowledge Discovery, Lecture Notes in Artificial Intelligence (LNAI), no. 7250, 2012, Springer-Verlag, pp. 91–103.

Kimmig, A, Galbrun, E, Toivonen, H and De Raedt, L, Patterns and Logic for Reasoning with Networks. MR Berthold (ed.), Bisociative Knowledge Discovery, Lecture Notes in Artificial Intelligence (LNAI), no. 7250, 2012, Springer-Verlag, pp. 122-143.

Langohr, LA, Podpecan, V, Petek, M, Mozetic, I and Gruden, K, Contrast Mining from Interesting Subgroups. MR Berthold (ed.), Bisociative Knowledge Discovery, Lecture Notes in Artificial Intelligence (LNAI), no. 7250, 2012, Springer-Verlag, pp. 390-406.

Langohr, LA and Toivonen, H, Finding representative nodes in probabilistic graphs. MR Berthold (ed.), Bisociative Knowledge Discovery, Lecture Notes in Artificial Intelligence (LNAI), no. 7250, 2012, Springer-Verlag, pp. 218–229.

Mozetic, I, Lavrac, N, Podpecan, V, Novak, PK, Motaln, H, Petek, M, Gruden, K, Toivonen, H and Kulovesi, K, Semantic Subgroup Discovery and Cross-context Linking for Microarray Data Analysis. MR Berthold (ed.), Bisociative Knowledge Discovery, Lecture Notes in Artificial Intelligence (LNAI), no. 7250, 2012, Springer-Verlag, pp. 379-389.

Piskorski, J and Yangarber, R, Information Extraction: Past, Present and Future. Multi-source, Multilingual Information Extraction and Summarization: Theory and Applications of Natural Language Processing, 2012, Springer-Verlag, pp. 23-49.

Toivonen, H, Zhou, F, Hartikainen, A and Hinkka, AE, Network Compression by Node and Edge Mergers. MR Berthold (ed.), Bisociative Knowledge Discovery, Lecture Notes in Artificial Intelligence (LNAI), no. 7250, 2012, Springer-Verlag, pp. 199–217.

Toivonen, H, Network Analysis: Overview. MR Berthold (ed.), Bisociative Knowledge Discovery, Lecture Notes in Artificial Intelligence (LNAI), no. 7250, 2012, Springer-Verlag, pp. 144–146.

Wahlroos, MP, Frosterus, M and Hyvönen, E, Tapaustutkimus: semanttinen linkitys ja tiedon löydettävyys puolustusvoimien normitietokannassa. V Kuikka (ed.), Tiedon kehittyneempi käsittely johtamisjärjestelmäarkkitehtuurissa - tutkimukset 2011, series 1, no. 5, Puolustusvoimien Johtamisjärjestelmäkeskus, 2012.

Zhou, F, Mahler, SJ and Toivonen, H, Simplification of Networks by Edge Pruning. MR Berthold (ed.), Bisociative Knowledge Discovery, Lecture Notes in Artificial Intelligence (LNAI), no. 7250, 2012, Springer-Verlag, pp. 179–198.

Zhou, F, Mahler, SJ and Toivonen, H, Review of BisoNet Abstraction Techniques. MR Berthold (ed.), Bisociative Knowledge Discovery, Lecture Notes in Artificial Intelligence (LNAI), no. 7250, 2012, Springer-Verlag, pp. 166–178.

B3 Unrefereed articles in conference proceedings

Binder, T, De Michelis, G, Ehn, P, Jacucci, G, Linde, P and Wagner, I, What is the object of design? Proceedings of the CHI 12 Extended Abstracts on Human Factors in Computing Systems (CHI EA’12), 2012, pp. 21-30.

Eggeling, R, Roos, TT, Myllymäki, P and Grosse, I, Comparison of NML and Bayesian scoring criteria for learning parsimonious Markov models. Proceedings of the 5th Workshop on Information Theoretic Methods in Science and Engineering (WITMSE-2012), 2012.

Gross, O, Doucet, A and Toivonen, H, Term Association Analysis for Named Entity Filtering. Proceedings of The Twenty First Text REtrieval Conference (TREC 2012), Gaithersburg, Maryland, November 6-9, 2012, pp. 67.

Heinonen, SE, Koivisto, E, Heinonen, M and Heikkinen, P, Seismic 3D modelling: case studies from Pyhäsalmi and Kevitsa, Finland. Proceedings of the Seventh Symposium on the Structure, Composition and Evolution of the Lithosphere in Finland (LITHOSPHERE 2012), Institute of Seismology Report, no. S-56, pp. 25-28.

Heinonen, SE, Heinonen, M and Koivisto, E, Full waveform forward seismic modeling of geologically complex environment: Comparison of simulated and field seismic data.  Geophysical Research Abstracts 14 European Geophysical Society at EGU General Assembly 2012, Vienna, Austria, April 22 - 27, 2012.

Hyvönen, E, Lindblad, A and Mäkelä, E, TravelSampo System for Creating Mobile Audio Guide Tours Enriched with Linked Data. Proceedings of CIDOC 2012 - Enriching Cultural Heritage, 2012.

Hyvönen, E, Lindquist, T, Törnroos, J and Mäkelä, E, History on the Semantic Web as Linked Data: An Event Gazetteer and Timeline for the World War I. Proceedings of CIDOC 2012 - Enriching Cultural Heritage, 2012.

Kettula, S and Hyvönen, E, Process-centric Cataloguing of Intangible Cultural Heritage. Proceedings of CIDOC 2012 - Enriching Cultural Heritage, 2012.

Kutvonen, L, Norta, A and Ruohomaa, S, Inter-enterprise business transaction management in open service ecosystems. Proceedings of the 6th IEEE International Enterprise Distributed Object Computing Conference (EDOC 2012), 2012, pp. 31-40.

Münch, J, Evolving Process Simulators by Using Validated Learning. Proceedings of the International Conference on Software and System Process (ICSSP 2012), 2012, pp. 226-227.

Pizzi, D, Kosunen, I, Viganó, C, Polli, AM, Ahmed, I, Zanella, D, Cavazza, M, Kouider, S, Freeman, J, Gamberini, L and Jacucci, G, Incorporating subliminal perception in synthetic environments. Proceedings of the 2012 ACM Conference on Ubiquitous Computing, 2012, pp. 1139-1144.

Shubin, M and Varvio, S-L, Analyzing the course of the A(H1N1) influenza epidemic of 2009 in Finland. Teorija i praktika sistemnogo analiza (Theory and applications of system analysis), 2012, pp. 62-68.

Shubin, M, Analysing the course of the A(H1N1) influenza epidemic of 2009-2010 in Finland. Proceedings of the Bioinformatics Research and Education Workshop, Bergen, Norway, 2 - 5 May, 2012.

Valitutti, A, Creative Coding for Humor Design: A Preliminary Exploration. Extended abstracts of the 3rd International Workshop on Computational Humor (Computational Humor 2012), 2012, pp. 39-40.

Valitutti, A, Toivonen, H, Gross, O and Toivanen, J, Decomposition and Distribution of Humorous Effect in Interactive Systems. Proceedings of the AAAI Fall Symposium Series  on Artificial Intelligence of Humor, AAAI Technical Reports, no. FS-12-02, 2012, pp. 96-100.

C1 Published scientific monographs

Daniel, L and Kojo, M, Enhancing TCP with Cross-layer Notifications and Capacity Estimation in Heterogeneous Access Networks. Department of Computer Science, Series of Publications C, no. C-2012-2, University of Helsinki, Department of Computer Science, Helsinki, 2012.

Hätönen, S, Li, Y and Kojo, M, Study of Middle-box Behavior on Transport Layer Protocols. Department of Computer Science, Series of Publications C, no. C-2012-4, University of Helsinki, Department of Computer Science, Helsinki, 2012.

Hätönen, S, Li, Y and Kojo, M, Study of Middle-box Behavior on Network Layer Protocols. Department of Computer Science, Series of Publications C, no. C-2012-3, University of Helsinki, Department of Computer Science, Helsinki, 2012.

Järvinen, I, Chemmagate, B, Ding, AY, Daniel, L and Kojo, M, Experimentation with Wireless Broadband Traffic Behaviour in WiBrA Project. Department of Computer Science, Series of Publications C, no. C-2012-19, University of Helsinki, Department of Computer Science, Helsinki, 2012.

Luosto, P, Kontkanen, P and Luosto, K, The normalized maximum likelihood distribution of the multinomial model class with positive maximum likelihood parameters. Department of Computer Science, Series of Publications C, no. C-2012-5, University of Helsinki, Department of Computer Science, Helsinki, 2012.

Münch, J, Armbrust, O, Kowalcyzk, M and Soto, M, Software Process Definition and Management. Springer-Verlag, 2012.

Norta, A, Safeguarding Trusted eBusiness Transactions of Lifecycles for Cross-Enterprize Collaboration. Department of Computer Science, Series of Publications C, no. C-2012-1, University of Helsinki, Department of Computer Science, Helsinki, 2012.

Tarkoma, S, Publish/Subscribe Systems: Design and Principles. Wiley, 2012.

C2 Edited books, compilations, conference proceedings or special issue of journals

Balint, A, Belov, A, Diepold, D, Gerber, S, Järvisalo, M and Sinz, C (eds), Proceedings of SAT Challenge 2012: Solver and Benchmark Descriptions. University of Helsinki, Department of Computer Science, Series of Publications B, no. B-2012-2, Helsinki, 2012.

Büren, G, Dumke, R, Ebert, C and Münch, J (eds), MetriKon 2012 - Praxis der Software-Messung: Tagungsband des DASMA Software Metrik Kongresses MetriKon 2012. Shaker Verlag, 2012.

Kangasharju, J and Bogoiavlenskii, IA (eds), Proceedings of AMICT 2010-2011: Advances in Methods of Information and Communication Technology. University of Helsinki, Department of Computer Science, Department of Computer Science Series of Publications B, no. B-2012-3, Helsinki, 2012.

Kärkkäinen, J and Stoye, J (eds), Proceedings of  the 23rd Annual Symposium  on Combinatorial Pattern Matching (CPM 2012), Helsinki, Finland, July 3-5, 2012. Lecture Notes in Computer Science, no. 7354, Springer-Verlag, 2012.

Peltonen, J, Raiko, T and Kaski, S (eds), Neurocomputing, Special Issue on Machine Learning for Signal Processing 2010. Neurocomputing, vol. 80, Elsevier Science, 2012.

Poibeau, T, Saggion, H, Piskorski, J and Yangarber, R (eds), Multi-source, Multilingual Information Extraction and Summarization. Theory and Applications of Natural Language Processing, Springer-Verlag, Berlin, Heidelberg, 2012.

de Rooij, S, Kotlowski, W, Rissanen, J, Myllymäki, P, Roos, T and Yamanishi, K (eds), Proceedings of the Fifth Workshop on Information Theoretic Methods in Science and Engineering (WITMSE-2012). Amsterdam, 2012.

D1 Articles in professional journals

Kettunen, P, Systematizing Agile Software Development: Towards an Integrative Enterprise Capability Improvement Reference Framework. Journal of Enterprise Transformation, vol. 2, no. 2, 2012, pp. 81-104.

Lehikoinen, A, Hokkanen, T and Lokki, H, Vaeltavien varpuspöllöjen ikä- ja sukupuolijakaumaan sekä vaelluksen ajoittumiseen vaikuttavista tekijöistä. Rengastajan vuosikirja, vol. 2011, 2012, pp. 15–16.

D3 Articles in professional conference proceedings

Järvinen, I, Chemmagate, B, Daniel, L, Ding, AY, Kojo, MPI and Isomäki, M, Impact of TCP on Interactive Real-Time Communication: Position Paper. Internet Architecture Board (IAB) / Internet Research Task Force (IRTF) Workshop on Congestion Control for Interactive Real-Time Communication, 2012.

D4 Published development or research reports

Hyvönen, E, Museoalan ontologiat Suomessa: Kansallisen FinnONTO-hankkeen tulosten hyödyntäminen. Aalto University, Department of Media Technology, 4, 2012.

E1 Popular contributions to journals, books or other compilations

Toivanen, J and Toivanen, P, Konedadaa vai keskeisloruja? Parnasso, no. 4, 2012, pp. 22–25.

Huttunen, SM, Tietojenkäsittelytiede: Tiedoneristäminen. V Heikkinen, E Voutilainen, P Lauerma, U Tiililä and M Lounela (eds), Genreanalyysi – tekstilajitutkimuksen käsikirja. Kotimaisten kielten keskuksen julkaisuja, no. 169, Gaudeamus Helsinki University Press, Helsinki, 2012, pp. 696-706.

F2 Public contributions to artistic work

Paakkanen, H and Toivanen, J, Tee se kotona. Kiitos. 2012.

G2 Master's theses, diploma work, upper higher vocational diplomas

Du, M, Improving performance quality and user experience in the PULS News Mining system. University of Helsinki, Department of Computer Science, Series of Publications C, University of Helsinki, Helsinki, 2012.

Toivanen, J, Yksilöllinen vaihtelu työmuistiprosesseihin liittyvissä alfa-oskillaatioissa. University of Helsinki, Department of Computer Science, Series of Publications C, University of Helsinki, Helsinki, 2012.

G4 Doctoral theses, monographies

Parviainen, P, Algorithms for Exact Structure Discovery in Bayesian Networks. University of Helsinki, Department of Computer Science, Series of Publications A, no. A-2012-1, Helsinki, 2012.

Ruohomaa, S, The effect of reputation on trust decisions in inter-enterprise collaborations. University of Helsinki, Department of Computer Science, Series of Publications A, no. A-2012-4, Helsinki, 2012.

Varjonen, S, Secure Connectivity with Persistent Identities. University of Helsinki, Department of Computer Science, Series of Publications A, no. A-2012-8, Helsinki, 2012.

Wessman, J, Mixture Model Clustering in the Analysis of Complex Diseases. University of Helsinki, Department of Computer Science, Series of Publications A, no. A-2012-2, Helsinki, 2012.

G5 Doctoral theses, article-based

Heinonen, M, Computational Methods for Small Molecules. University of Helsinki, Department of Computer Science, Series of Publications A, no. A-2012-9, Helsinki, 2012.

Pöyhönen, P, Access Selection Methods in Cooperative Multi-operator Environments to Improve End-user and Operator Satisfaction. University of Helsinki, Department of Computer Science, Series of Publications A, no. A-2012-3, Helsinki, 2012.

Sirén, J, Compressed Full-Text Indexes for Highly Repetitive Collections. University of Helsinki, Department of Computer Science, Series of Publications A, no. A-2012-5, Helsinki, 2012.

Välimäki, N, Applications of Compressed Data Structures on Sequences and Structured Data. University of Helsinki, Department of Computer Science, Series of Publications A, no. A-2012-7, Helsinki, 2012.

Zhou, F, Methods for Network Abstraction. University of Helsinki, Department of Computer Science, Series of Publications A, no. A-2012-6, Helsinki, 2012.

I2 ICT programs or applications

Varjonen, S, Implementation of Y.1731 for Linux. 2012.